Index

_

__init__() (macro_eeg_model.config.connectivity_model.ConnectivityModel method) (macro_eeg_model.config.ConnectivityModel method) (macro_eeg_model.config.model_config.ModelConfig method) (macro_eeg_model.config.ModelConfig method) (macro_eeg_model.config.nodes_processor.NodesProcessor method) (macro_eeg_model.config.NodesProcessor method) (macro_eeg_model.config.Parser method) (macro_eeg_model.config.parser.Parser method) (macro_eeg_model.evaluation.coherence_computer.CoherenceComputer method) (macro_eeg_model.evaluation.CoherenceComputer method) (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.evaluation.fooof_tester.FooofTester method) (macro_eeg_model.evaluation.peak_tester.PeakTester method) (macro_eeg_model.evaluation.PeakTester method) (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor method) (macro_eeg_model.evaluation.SimulationDataExtractor method) (macro_eeg_model.Evaluator method) (macro_eeg_model.GlobalSimulation method) (macro_eeg_model.simulation.delay_calculator.DelayCalculator method) (macro_eeg_model.simulation.DelayCalculator method) (macro_eeg_model.simulation.distributions.InverseGEV method) (macro_eeg_model.simulation.distributions.InverseGEVSum method) (macro_eeg_model.simulation.distributions.LagDistributions method) (macro_eeg_model.simulation.global_simulation.GlobalSimulation method) (macro_eeg_model.simulation.GlobalSimulation method) (macro_eeg_model.simulation.InverseGEV method) (macro_eeg_model.simulation.InverseGEVSum method) (macro_eeg_model.simulation.LagDistributions method) (macro_eeg_model.simulation.simulation_info.SimulationInfo method) (macro_eeg_model.simulation.SimulationInfo method) (macro_eeg_model.simulation.Simulator method) (macro_eeg_model.simulation.simulator.Simulator method) (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper method) (macro_eeg_model.simulation.StationaryModelDeveloper method) (macro_eeg_model.utils.Paths method) (macro_eeg_model.utils.paths.Paths method) __str__() (macro_eeg_model.config.model_config.ModelConfig method) (macro_eeg_model.config.ModelConfig method) _add_arguments() (macro_eeg_model.config.Parser method) (macro_eeg_model.config.parser.Parser method) _adjust_connectivity_weights() (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper method) (macro_eeg_model.simulation.StationaryModelDeveloper method) _areas_dict (macro_eeg_model.config.nodes_processor.NodesProcessor attribute) (macro_eeg_model.config.NodesProcessor attribute) _argcheck() (macro_eeg_model.simulation.distributions.InverseGEV method) (macro_eeg_model.simulation.distributions.InverseGEVSum method) (macro_eeg_model.simulation.InverseGEV method) (macro_eeg_model.simulation.InverseGEVSum method) _avg_counts (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) _avg_fc (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) _avg_lengths (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) _calculate_avg_array() (macro_eeg_model.data_prep.data_preparator.DataPreparator static method) (macro_eeg_model.data_prep.DataPreparator static method) _calculate_lag_connectivity_weights() (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper method) (macro_eeg_model.simulation.StationaryModelDeveloper method) _calculate_scale_coefficient() (macro_eeg_model.simulation.delay_calculator.DelayCalculator method) (macro_eeg_model.simulation.DelayCalculator method) _cdf() (macro_eeg_model.simulation.distributions.InverseGEV method) (macro_eeg_model.simulation.InverseGEV method) _choose_and_run_test() (macro_eeg_model.evaluation.peak_tester.PeakTester method) (macro_eeg_model.evaluation.PeakTester method) _compute_coherence() (macro_eeg_model.evaluation.coherence_computer.CoherenceComputer method) (macro_eeg_model.evaluation.CoherenceComputer method) _connectivity_weights (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper attribute) (macro_eeg_model.simulation.StationaryModelDeveloper attribute) _convert_csv_file_to_numpy_array() (macro_eeg_model.data_prep.data_preparator.DataPreparator static method) (macro_eeg_model.data_prep.DataPreparator static method) _default_custom_connectivity (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_dist_location (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_dist_scale (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_dist_shape (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_dist_trunc_percent (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_model_name (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_n (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_nodes (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_noise_color (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_relay_station (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_sample_rate (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_std_noise (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_t_burnit (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_t_lags (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _default_t_secs (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) _delay_calculator (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper attribute) (macro_eeg_model.simulation.StationaryModelDeveloper attribute) _delays_x (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper attribute) (macro_eeg_model.simulation.StationaryModelDeveloper attribute) _detrend_data() (macro_eeg_model.evaluation.peak_tester.PeakTester method) (macro_eeg_model.evaluation.PeakTester method) _dist_location (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) _dist_scale (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) _dist_shape (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) _distances (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper attribute) (macro_eeg_model.simulation.StationaryModelDeveloper attribute) _evaluate_coherence_node_pair() (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method) _evaluate_fooof() (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method) _evaluate_metric() (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method) _evaluate_peaks() (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method) _evaluate_power_node() (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method) _extract_csv_files() (macro_eeg_model.data_prep.data_preparator.DataPreparator static method) (macro_eeg_model.data_prep.DataPreparator static method) _find_final_generation_children() (macro_eeg_model.config.nodes_processor.NodesProcessor method) (macro_eeg_model.config.NodesProcessor method) _get_arrays_from_files() (macro_eeg_model.data_prep.data_preparator.DataPreparator method) (macro_eeg_model.data_prep.DataPreparator method) _get_ax() (macro_eeg_model.evaluation.Evaluator static method) (macro_eeg_model.evaluation.evaluator.Evaluator static method) (macro_eeg_model.Evaluator static method) _get_fooof_peaks() (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method)

_get_kde() (macro_eeg_model.simulation.distributions.InverseGEVSum method) (macro_eeg_model.simulation.InverseGEVSum method) _get_lag_distribution() (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper method) (macro_eeg_model.simulation.StationaryModelDeveloper method) _get_nodes() (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method) _get_nodes_and_indices() (macro_eeg_model.config.nodes_processor.NodesProcessor method) (macro_eeg_model.config.NodesProcessor method) _get_pair_stats() (macro_eeg_model.config.connectivity_model.ConnectivityModel method) (macro_eeg_model.config.ConnectivityModel method) _get_peaks() (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method) _get_processed_simulations_data() (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor method) (macro_eeg_model.evaluation.SimulationDataExtractor method) _get_processed_simulations_epoched_power() (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor method) (macro_eeg_model.evaluation.SimulationDataExtractor method) _get_processed_simulations_power() (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor method) (macro_eeg_model.evaluation.SimulationDataExtractor method) _get_simulated_coherences() (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method) _get_simulated_power() (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method) _get_simulations_data_per_node() (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor method) (macro_eeg_model.evaluation.SimulationDataExtractor method) _get_simulations_epoched_power_per_node() (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor method) (macro_eeg_model.evaluation.SimulationDataExtractor method) _get_simulations_info() (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor method) (macro_eeg_model.evaluation.SimulationDataExtractor method) _get_simulations_power_per_node() (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor method) (macro_eeg_model.evaluation.SimulationDataExtractor method) _get_surface_nodes() (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor static method) (macro_eeg_model.evaluation.SimulationDataExtractor static method) _given_nodes (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) _init_connectivity() (macro_eeg_model.config.connectivity_model.ConnectivityModel method) (macro_eeg_model.config.ConnectivityModel method) _init_data() (macro_eeg_model.config.connectivity_model.ConnectivityModel method) (macro_eeg_model.config.ConnectivityModel method) _init_nodes() (macro_eeg_model.config.connectivity_model.ConnectivityModel method) (macro_eeg_model.config.ConnectivityModel method) _init_relay_distances() (macro_eeg_model.config.connectivity_model.ConnectivityModel method) (macro_eeg_model.config.ConnectivityModel method) _initialize_nodes_and_indices() (macro_eeg_model.config.nodes_processor.NodesProcessor method) (macro_eeg_model.config.NodesProcessor method) _is_stationary() (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper method) (macro_eeg_model.simulation.StationaryModelDeveloper method) _kde (macro_eeg_model.simulation.distributions.InverseGEVSum attribute) (macro_eeg_model.simulation.InverseGEVSum attribute) _lag_connectivity_weights (macro_eeg_model.simulation.Simulator attribute) (macro_eeg_model.simulation.simulator.Simulator attribute) _load_data() (macro_eeg_model.config.connectivity_model.ConnectivityModel method) (macro_eeg_model.config.ConnectivityModel method) _load_yaml() (macro_eeg_model.config.Parser static method) (macro_eeg_model.config.parser.Parser static method) _location_param (macro_eeg_model.simulation.delay_calculator.DelayCalculator attribute) (macro_eeg_model.simulation.DelayCalculator attribute) _nodes (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper attribute) (macro_eeg_model.simulation.StationaryModelDeveloper attribute) _nodes_indices (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) _noise_color (macro_eeg_model.simulation.Simulator attribute) (macro_eeg_model.simulation.simulator.Simulator attribute) _nr_lags (macro_eeg_model.simulation.Simulator attribute) (macro_eeg_model.simulation.simulator.Simulator attribute) (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper attribute) (macro_eeg_model.simulation.StationaryModelDeveloper attribute) _nr_nodes (macro_eeg_model.simulation.Simulator attribute) (macro_eeg_model.simulation.simulator.Simulator attribute) (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper attribute) (macro_eeg_model.simulation.StationaryModelDeveloper attribute) _output_dir (macro_eeg_model.simulation.simulation_info.SimulationInfo attribute) (macro_eeg_model.simulation.SimulationInfo attribute) _parse_nodes() (macro_eeg_model.config.Parser static method) (macro_eeg_model.config.parser.Parser static method) _parse_relay_station() (macro_eeg_model.config.Parser static method) (macro_eeg_model.config.parser.Parser static method) _pdf() (macro_eeg_model.simulation.distributions.InverseGEV method) (macro_eeg_model.simulation.distributions.InverseGEVSum method) (macro_eeg_model.simulation.InverseGEV method) (macro_eeg_model.simulation.InverseGEVSum method) _plot_metric() (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method) _plot_properties() (macro_eeg_model.config.model_config.ModelConfig method) (macro_eeg_model.config.ModelConfig method) _plot_simulated_data() (macro_eeg_model.evaluation.Evaluator static method) (macro_eeg_model.evaluation.evaluator.Evaluator static method) (macro_eeg_model.Evaluator static method) _populate_nodes_indices() (macro_eeg_model.config.nodes_processor.NodesProcessor method) (macro_eeg_model.config.NodesProcessor method) _ppf() (macro_eeg_model.simulation.distributions.InverseGEV method) (macro_eeg_model.simulation.InverseGEV method) _prep_and_save_data() (macro_eeg_model.data_prep.data_preparator.DataPreparator method) (macro_eeg_model.data_prep.DataPreparator method) _process_nodes() (macro_eeg_model.config.nodes_processor.NodesProcessor method) (macro_eeg_model.config.NodesProcessor method) _relay_distances (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) _relay_indices (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) _relay_nodes (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) _relay_station (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) _rvs() (macro_eeg_model.simulation.distributions.InverseGEV method) (macro_eeg_model.simulation.InverseGEV method) _sample_rate (macro_eeg_model.simulation.Simulator attribute) (macro_eeg_model.simulation.simulator.Simulator attribute) (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper attribute) (macro_eeg_model.simulation.StationaryModelDeveloper attribute) _scale_param (macro_eeg_model.simulation.delay_calculator.DelayCalculator attribute) (macro_eeg_model.simulation.DelayCalculator attribute) _separate_peaks() (macro_eeg_model.evaluation.peak_tester.PeakTester method) (macro_eeg_model.evaluation.PeakTester method) _shape_param (macro_eeg_model.simulation.delay_calculator.DelayCalculator attribute) (macro_eeg_model.simulation.DelayCalculator attribute) _smooth_signal() (macro_eeg_model.evaluation.coherence_computer.CoherenceComputer method) (macro_eeg_model.evaluation.CoherenceComputer method) _std_noise (macro_eeg_model.simulation.Simulator attribute) (macro_eeg_model.simulation.simulator.Simulator attribute) _t_burnit (macro_eeg_model.simulation.Simulator attribute) (macro_eeg_model.simulation.simulator.Simulator attribute) _t_secs (macro_eeg_model.simulation.Simulator attribute) (macro_eeg_model.simulation.simulator.Simulator attribute) _tempx (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper attribute) (macro_eeg_model.simulation.StationaryModelDeveloper attribute) _truncate_result() (macro_eeg_model.simulation.delay_calculator.DelayCalculator method) (macro_eeg_model.simulation.DelayCalculator method) _truncation_percentile (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) (macro_eeg_model.simulation.delay_calculator.DelayCalculator attribute) (macro_eeg_model.simulation.DelayCalculator attribute) _validate_args() (macro_eeg_model.config.Parser static method) (macro_eeg_model.config.parser.Parser static method) _velocity_factor (macro_eeg_model.simulation.delay_calculator.DelayCalculator attribute) (macro_eeg_model.simulation.DelayCalculator attribute) _window_type (macro_eeg_model.evaluation.coherence_computer.CoherenceComputer attribute) (macro_eeg_model.evaluation.CoherenceComputer attribute)

A

AreasTerminologyParser (class in macro_eeg_model.data_prep) (class in macro_eeg_model.data_prep.areas_terminology_parser)

B

base_dir (macro_eeg_model.utils.Paths attribute) (macro_eeg_model.utils.paths.Paths attribute)

C

calculate_power() (macro_eeg_model.simulation.eeg_analyzer.EEGAnalyzer static method) (macro_eeg_model.simulation.EEGAnalyzer static method) CoherenceComputer (class in macro_eeg_model.evaluation) (class in macro_eeg_model.evaluation.coherence_computer) COLOR_MAP (in module macro_eeg_model.utils.plotting_setup) COLORS (in module macro_eeg_model.utils) (in module macro_eeg_model.utils.plotting_setup) compute_coherence_matched() (macro_eeg_model.evaluation.coherence_computer.CoherenceComputer method) (macro_eeg_model.evaluation.CoherenceComputer method) compute_test_result() (macro_eeg_model.evaluation.peak_tester.PeakTester method) (macro_eeg_model.evaluation.PeakTester method)

configs_path (macro_eeg_model.utils.Paths attribute) (macro_eeg_model.utils.paths.Paths attribute) connectivity_data_path (macro_eeg_model.utils.Paths attribute) (macro_eeg_model.utils.paths.Paths attribute) connectivity_weights (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) (macro_eeg_model.simulation.simulation_info.SimulationInfo attribute) (macro_eeg_model.simulation.SimulationInfo attribute) ConnectivityModel (class in macro_eeg_model.config) (class in macro_eeg_model.config.connectivity_model)

D

DataPreparator (class in macro_eeg_model.data_prep) (class in macro_eeg_model.data_prep.data_preparator) DataProcessor (class in macro_eeg_model.simulation) (class in macro_eeg_model.simulation.data_processor) delay_calculator (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) DelayCalculator (class in macro_eeg_model.simulation) (class in macro_eeg_model.simulation.delay_calculator) develop() (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper method) (macro_eeg_model.simulation.StationaryModelDeveloper method)

distances (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) (macro_eeg_model.simulation.simulation_info.SimulationInfo attribute) (macro_eeg_model.simulation.SimulationInfo attribute) DistributionFactory (class in macro_eeg_model.simulation) (class in macro_eeg_model.simulation.distributions)

E

EEGAnalyzer (class in macro_eeg_model.simulation) (class in macro_eeg_model.simulation.eeg_analyzer) evaluate module evaluate() (in module evaluate) (macro_eeg_model.evaluation.Evaluator method) (macro_eeg_model.evaluation.evaluator.Evaluator method) (macro_eeg_model.Evaluator method)

Evaluator (class in macro_eeg_model) (class in macro_eeg_model.evaluation) (class in macro_eeg_model.evaluation.evaluator)

F

filter_data() (macro_eeg_model.simulation.data_processor.DataProcessor static method) (macro_eeg_model.simulation.DataProcessor static method) fm (macro_eeg_model.evaluation.fooof_tester.FooofTester attribute) font_path (in module macro_eeg_model.utils.plotting_setup) FooofTester (class in macro_eeg_model.evaluation.fooof_tester) frequencies (macro_eeg_model.evaluation.Evaluator attribute) (macro_eeg_model.evaluation.evaluator.Evaluator attribute) (macro_eeg_model.evaluation.fooof_tester.FooofTester attribute) (macro_eeg_model.evaluation.peak_tester.PeakTester attribute) (macro_eeg_model.evaluation.PeakTester attribute) (macro_eeg_model.Evaluator attribute) (macro_eeg_model.simulation.simulation_info.SimulationInfo attribute) (macro_eeg_model.simulation.SimulationInfo attribute)

fs (macro_eeg_model.evaluation.coherence_computer.CoherenceComputer attribute) (macro_eeg_model.evaluation.CoherenceComputer attribute)

G

get_delays_distribution() (macro_eeg_model.simulation.delay_calculator.DelayCalculator method) (macro_eeg_model.simulation.DelayCalculator method) get_distribution() (macro_eeg_model.simulation.DistributionFactory static method) (macro_eeg_model.simulation.distributions.DistributionFactory static method) get_nodes_indices() (macro_eeg_model.config.nodes_processor.NodesProcessor method) (macro_eeg_model.config.NodesProcessor method) get_parsed_args() (in module macro_eeg_model.config) (in module macro_eeg_model.config.configs)

get_peaks_positions() (macro_eeg_model.evaluation.fooof_tester.FooofTester method) get_simulate_config() (in module macro_eeg_model) (in module macro_eeg_model.config) (in module macro_eeg_model.config.configs) given_nodes (macro_eeg_model.config.nodes_processor.NodesProcessor attribute) (macro_eeg_model.config.NodesProcessor attribute) GlobalSimulation (class in macro_eeg_model) (class in macro_eeg_model.simulation) (class in macro_eeg_model.simulation.global_simulation)

I

INVERSE_GEV (macro_eeg_model.simulation.distributions.LagDistributions attribute) (macro_eeg_model.simulation.LagDistributions attribute) INVERSE_GEV_SUM (macro_eeg_model.simulation.distributions.LagDistributions attribute) (macro_eeg_model.simulation.LagDistributions attribute)

InverseGEV (class in macro_eeg_model.simulation) (class in macro_eeg_model.simulation.distributions) InverseGEVSum (class in macro_eeg_model.simulation) (class in macro_eeg_model.simulation.distributions)

J

julich_data_path (macro_eeg_model.utils.Paths attribute) (macro_eeg_model.utils.paths.Paths attribute)

L

labels_julich (in module macro_eeg_model.data_prep) (in module macro_eeg_model.data_prep.labels) lag_connectivity_weights (macro_eeg_model.simulation.simulation_info.SimulationInfo attribute) (macro_eeg_model.simulation.SimulationInfo attribute) LagDistributions (class in macro_eeg_model.simulation) (class in macro_eeg_model.simulation.distributions) lmbd (macro_eeg_model.simulation.distributions.InverseGEV attribute) (macro_eeg_model.simulation.InverseGEV attribute)

lmbd1 (macro_eeg_model.simulation.distributions.InverseGEVSum attribute) (macro_eeg_model.simulation.InverseGEVSum attribute) lmbd2 (macro_eeg_model.simulation.distributions.InverseGEVSum attribute) (macro_eeg_model.simulation.InverseGEVSum attribute) load_simulation_info() (macro_eeg_model.simulation.simulation_info.SimulationInfo method) (macro_eeg_model.simulation.SimulationInfo method)

M

macro_eeg_model module macro_eeg_model.config module macro_eeg_model.config.configs module macro_eeg_model.config.connectivity_model module macro_eeg_model.config.model_config module macro_eeg_model.config.nodes_processor module macro_eeg_model.config.parser module macro_eeg_model.data_prep module macro_eeg_model.data_prep.areas_terminology_parser module macro_eeg_model.data_prep.data_preparator module macro_eeg_model.data_prep.labels module macro_eeg_model.evaluation module macro_eeg_model.evaluation.coherence_computer module macro_eeg_model.evaluation.evaluator module macro_eeg_model.evaluation.fooof_tester module macro_eeg_model.evaluation.peak_tester module macro_eeg_model.evaluation.simulation_data_extractor module macro_eeg_model.simulation module macro_eeg_model.simulation.data_processor module macro_eeg_model.simulation.delay_calculator module macro_eeg_model.simulation.distributions module macro_eeg_model.simulation.eeg_analyzer module macro_eeg_model.simulation.global_simulation module macro_eeg_model.simulation.simulation_info module

macro_eeg_model.simulation.simulator module macro_eeg_model.simulation.stationary_model_developer module macro_eeg_model.utils module macro_eeg_model.utils.paths module macro_eeg_model.utils.plotting_setup module ModelConfig (class in macro_eeg_model.config) (class in macro_eeg_model.config.model_config) module evaluate macro_eeg_model macro_eeg_model.config macro_eeg_model.config.configs macro_eeg_model.config.connectivity_model macro_eeg_model.config.model_config macro_eeg_model.config.nodes_processor macro_eeg_model.config.parser macro_eeg_model.data_prep macro_eeg_model.data_prep.areas_terminology_parser macro_eeg_model.data_prep.data_preparator macro_eeg_model.data_prep.labels macro_eeg_model.evaluation macro_eeg_model.evaluation.coherence_computer macro_eeg_model.evaluation.evaluator macro_eeg_model.evaluation.fooof_tester macro_eeg_model.evaluation.peak_tester macro_eeg_model.evaluation.simulation_data_extractor macro_eeg_model.simulation macro_eeg_model.simulation.data_processor macro_eeg_model.simulation.delay_calculator macro_eeg_model.simulation.distributions macro_eeg_model.simulation.eeg_analyzer macro_eeg_model.simulation.global_simulation macro_eeg_model.simulation.simulation_info macro_eeg_model.simulation.simulator macro_eeg_model.simulation.stationary_model_developer macro_eeg_model.utils macro_eeg_model.utils.paths macro_eeg_model.utils.plotting_setup simulate mu (macro_eeg_model.simulation.distributions.InverseGEV attribute) (macro_eeg_model.simulation.distributions.InverseGEVSum attribute) (macro_eeg_model.simulation.InverseGEV attribute) (macro_eeg_model.simulation.InverseGEVSum attribute)

N

nodes (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor attribute) (macro_eeg_model.evaluation.SimulationDataExtractor attribute) (macro_eeg_model.simulation.simulation_info.SimulationInfo attribute) (macro_eeg_model.simulation.SimulationInfo attribute) NodesProcessor (class in macro_eeg_model.config) (class in macro_eeg_model.config.nodes_processor)

noise_color (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) notation() (in module macro_eeg_model.utils) (in module macro_eeg_model.utils.plotting_setup) nr_lags (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) nr_nodes (macro_eeg_model.config.connectivity_model.ConnectivityModel attribute) (macro_eeg_model.config.ConnectivityModel attribute) (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute)

O

other_values (macro_eeg_model.evaluation.peak_tester.PeakTester attribute) (macro_eeg_model.evaluation.PeakTester attribute) others_range (macro_eeg_model.evaluation.peak_tester.PeakTester attribute) (macro_eeg_model.evaluation.PeakTester attribute)

output_path (macro_eeg_model.utils.Paths attribute) (macro_eeg_model.utils.paths.Paths attribute)

P

parse_args() (macro_eeg_model.config.Parser method) (macro_eeg_model.config.parser.Parser method) parse_into_dict() (macro_eeg_model.data_prep.areas_terminology_parser.AreasTerminologyParser static method) (macro_eeg_model.data_prep.AreasTerminologyParser static method) Parser (class in macro_eeg_model.config) (class in macro_eeg_model.config.parser) parser (macro_eeg_model.config.Parser attribute) (macro_eeg_model.config.parser.Parser attribute) Paths (class in macro_eeg_model.utils) (class in macro_eeg_model.utils.paths) paths (in module macro_eeg_model.utils) (in module macro_eeg_model.utils.paths) peak_values (macro_eeg_model.evaluation.peak_tester.PeakTester attribute) (macro_eeg_model.evaluation.PeakTester attribute) peaks_range (macro_eeg_model.evaluation.peak_tester.PeakTester attribute) (macro_eeg_model.evaluation.PeakTester attribute) PeakTester (class in macro_eeg_model.evaluation) (class in macro_eeg_model.evaluation.peak_tester) plot() (macro_eeg_model.config.model_config.ModelConfig method) (macro_eeg_model.config.ModelConfig method)

PLOT_COLORS (in module macro_eeg_model.utils.plotting_setup) plot_connectivity() (macro_eeg_model.simulation.stationary_model_developer.StationaryModelDeveloper method) (macro_eeg_model.simulation.StationaryModelDeveloper method) PLOT_FORMAT (in module macro_eeg_model.utils) (in module macro_eeg_model.utils.plotting_setup) plot_power() (macro_eeg_model.simulation.eeg_analyzer.EEGAnalyzer static method) (macro_eeg_model.simulation.EEGAnalyzer static method) PLOT_SIZE (in module macro_eeg_model.utils) (in module macro_eeg_model.utils.plotting_setup) plots_path (macro_eeg_model.utils.Paths attribute) (macro_eeg_model.utils.paths.Paths attribute) populate_labels_julich() (in module macro_eeg_model.data_prep) (in module macro_eeg_model.data_prep.labels) power (macro_eeg_model.simulation.simulation_info.SimulationInfo attribute) (macro_eeg_model.simulation.SimulationInfo attribute) powers (macro_eeg_model.evaluation.peak_tester.PeakTester attribute) (macro_eeg_model.evaluation.PeakTester attribute) prep_and_save() (macro_eeg_model.data_prep.data_preparator.DataPreparator method) (macro_eeg_model.data_prep.DataPreparator method)

R

relay_station (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) (macro_eeg_model.config.nodes_processor.NodesProcessor attribute) (macro_eeg_model.config.NodesProcessor attribute)

run() (macro_eeg_model.GlobalSimulation method) (macro_eeg_model.simulation.global_simulation.GlobalSimulation method) (macro_eeg_model.simulation.GlobalSimulation method)

S

sample_rate (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) (macro_eeg_model.simulation.simulation_info.SimulationInfo attribute) (macro_eeg_model.simulation.SimulationInfo attribute) sample_rates (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor attribute) (macro_eeg_model.evaluation.SimulationDataExtractor attribute) save_simulation_info() (macro_eeg_model.simulation.simulation_info.SimulationInfo method) (macro_eeg_model.simulation.SimulationInfo method) segment_data() (macro_eeg_model.simulation.data_processor.DataProcessor static method) (macro_eeg_model.simulation.DataProcessor static method) set_connectivity() (macro_eeg_model.config.connectivity_model.ConnectivityModel method) (macro_eeg_model.config.ConnectivityModel method) sigma (macro_eeg_model.simulation.distributions.InverseGEV attribute) (macro_eeg_model.simulation.distributions.InverseGEVSum attribute) (macro_eeg_model.simulation.InverseGEV attribute) (macro_eeg_model.simulation.InverseGEVSum attribute) simulate module simulate() (in module simulate) (macro_eeg_model.simulation.Simulator method) (macro_eeg_model.simulation.simulator.Simulator method) simulation_data (macro_eeg_model.simulation.simulation_info.SimulationInfo attribute) (macro_eeg_model.simulation.SimulationInfo attribute)

simulation_data_extractor (macro_eeg_model.evaluation.Evaluator attribute) (macro_eeg_model.evaluation.evaluator.Evaluator attribute) (macro_eeg_model.Evaluator attribute) simulation_names (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor attribute) (macro_eeg_model.evaluation.SimulationDataExtractor attribute) SimulationDataExtractor (class in macro_eeg_model.evaluation) (class in macro_eeg_model.evaluation.simulation_data_extractor) SimulationInfo (class in macro_eeg_model.simulation) (class in macro_eeg_model.simulation.simulation_info) simulations_data_per_node (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor attribute) (macro_eeg_model.evaluation.SimulationDataExtractor attribute) simulations_epoched_power_per_node (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor attribute) (macro_eeg_model.evaluation.SimulationDataExtractor attribute) simulations_power_per_node (macro_eeg_model.evaluation.simulation_data_extractor.SimulationDataExtractor attribute) (macro_eeg_model.evaluation.SimulationDataExtractor attribute) Simulator (class in macro_eeg_model.simulation) (class in macro_eeg_model.simulation.simulator) StationaryModelDeveloper (class in macro_eeg_model.simulation) (class in macro_eeg_model.simulation.stationary_model_developer) std_noise (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute)

T

t_burnit (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute)

t_secs (macro_eeg_model.config.model_config.ModelConfig attribute) (macro_eeg_model.config.ModelConfig attribute) to_rgba (in module macro_eeg_model.utils.plotting_setup)

X

xi (macro_eeg_model.simulation.distributions.InverseGEV attribute) (macro_eeg_model.simulation.distributions.InverseGEVSum attribute) (macro_eeg_model.simulation.InverseGEV attribute) (macro_eeg_model.simulation.InverseGEVSum attribute)