Reproducing results#

To reproduce the slow wave dynamics of scalp EEG, the simulations are to be run (and evaluated) with the parameters outlined below.

	relay	dist params	noise_color	std_noise	connectivity weights
`Simulation #1 (white)`	none	Custom (-0.25, 0.09, 0.25)	white	1950	Custom
`Simulation #1 (pink)`	none	Custom (-0.25, 0.09, 0.25)	pink	27000	Custom
`Simulation #2 (white)`	thalamus	Sepehrband et al., 2016 (-0.21, 0.16, 0.43)	white	1950	BOLD-based
`Simulation #2 (pink)`	thalamus	Sepehrband et al., 2016 (-0.21, 0.16, 0.43)	pink	27000	BOLD-based

nodes	n	sample_rate	t_lags	t_secs	t_burnit	dist_trunc_percent
frontal lobe; parietal lobe; occiptal lobe; temporal lobe; thalamus	1	1000	300	500	10	0.0

The sequence of steps to reproduce the results is outlined in the reproduce.sh script and can be run in one go:

./reproduce.sh